Hey there!
I'm currently experiencing a lot of problems when updating my atlas, since it moves all parts around and messes up my manually changed mOuter&mInner rectangles. For example, a manually configured tiled square, changes back to it's automatically set rectangles, which forces me to manually change it again. With one texture this wouldn't be a problem, however, with more textures this will cost too much time when later in my projects I have to make changes to the Atlas.
Any way to fix this bug - (is it a bug?)
Cheers,
Ivo