Upgraded to 2.6.5b and now I am unable to make an atlas.
I select textures in the project view and they don't show up in the atlas maker. The atlas maker seems to know -something- is selected, as it changes layout vs when nothing is selected. But nothing shows up in the list. Once I click Create the atlas is created but with no texture.
Tried this in a brand new empty project as well as in a full project. Unity 4.2.1.