If you can't upgrade to the latest -- which I would strongly advise by the way -- then your only other option is to resolve the errors yourself in a similar fashion. NGUI 2 line has been deprecated and will not be receiving any new updates.
I already tried to update to NGui 3 before, and i failed. The scaling of my font is destroyed with the update. The project is nearly done. It`s not worth the hassle to rebuild my gui just because of a not good working update. It already works.
I don`t want an upgrade for 2.7x. I just want to resolve those two remaining problems. By myself. And as told above, i already have solved quite a few problems with the undo. Unfortunately the advices in the warnings are everything but clear. And i am in trouble with the two remaining cases. So i need a bit help here. That`s why i ask here, at the NGui Support forum.
Honestly, i am a bit disappointed that i cannot get a clear answer how to fix this issues.
Also, just because it's a red warning, doesn't mean it won't work. 
This is not true. Unity moans about conflicts then, and refuses to start the game until the error is fixed.