In your video you already have the reference atlas in the scene. (Which kind of defeats the purpose of explaining how to use to use them if you don't know how to create a prefab reference atlas)
So, since the atlases are already in the projects folder, how do you make a prefab (reference) atlas then?
Simply duplicating an existing atlas and then changing the Atlas Type to reference doesn't seem to work. As soon as you click back on the newly duplicated atlas, it's Atlas Type reverts back to Normal instead of Reference. Frustrating!
